sccross.data

Auxiliary functions for anndata.AnnData objects that are not covered in scanpy.

Functions

aggregate_obs	Aggregate obs in a given dataset by certain categories
extract_rank_genes_groups	Extract result of scanpy.tl.rank_genes_groups() in the form of marker gene data frame for specific cell groups
geneActivity	Gene activity score calculation
get_metacells	Aggregate datasets into metacells
lsi	LSI analysis (following the Seurat v3 approach)
metacell_corr	Metacell based correlation
metacell_regr	Metacell-based regression
mnn_prior	MNN prior generation