sccross.metrics.seurat_alignment_score

sccross.metrics.seurat_alignment_score(x, y, neighbor_frac=0.01, n_repeats=4, random_state=None, **kwargs)

Seurat alignment score

Parameters

• x (ndarray) – Coordinates

• y (ndarray) – Batch labels

• neighbor_frac (float) – Nearest neighbor fraction

• n_repeats (int) – Number of subsampling repeats

• random_state (Union[RandomState, int, None]) – Random state

• **kwargs – Additional keyword arguments are passed to sklearn.neighbors.NearestNeighbors

Return type

float

Returns

sas – Seurat alignment score