sccross.models.sccross.SCCROSSModel.encode_data

SCCROSSModel.encode_data(key, adata, batch_size=128, n_sample=None)

Compute data (cell) embedding

Parameters

• key (str) – Domain key

• adata (AnnData) – Input dataset

• batch_size (int) – Size of minibatches

• n_sample (Optional[int]) – Number of samples from the embedding distribution, by default None, returns the mean of the embedding distribution.

Return type

ndarray

Returns

data_embedding – Data (cell) embedding with shape \(n_{cell} \times n_{dim}\) if n_sample is None, or shape \(n_{cell} \times n_{sample} \times n_{dim}\) if n_sample is not None.